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Zhou YF, Minio A, Solares E, Lyu Y, Cantu D#, Gaut BS# (2019) Population genetics of structural variation in grapevine domestication. Nature Plants, 5, 965–979.
Zhou YF, Muyle A, Gaut BS (2019) Evolutionary Genomics and the Domestication of Grapes. The Grape Genome, Dario Cantu and M. Andrew Walker (Eds).
Zhou YF, Minio A, Solares E, Lyu Y, Cantu D#, Gaut BS# (2019) Structural variants, clonal propagation, and genome evolution in grapevine (Vitis vinifera). bioRxiv, doi:10.1101/508119,
Lv YD, Hu FQ, Zhou YF, Wu FL, Gaut BS (2019) Maize transposable elements contribute to long non-coding RNAs that are regulatory hubs for abiotic stress response. BMC Genomics 20 (1), 864
Vondras AM, Minio A, Blanco-Ulate B, Figueroa-Balderas R, Penn MA, Zhou YF, Seymour D, Zhou Y, Liang D, Espinoza LK, Anderson MM, Walker AM, Gaut BS, Cantu D (2019) The genomic diversification of clonally propagated grapevine. bioRxiv, doi:10.1101/585869
Hu FQ, Zhou YF, Wu FL, Lv YD, Gaut BS (2019) Maize transposable elements contribute to long non-coding RNAs that are regulatory hubs for abiotic stress response. bioRxiv: doi: https://doi.org/10.1101/801704.
Fan B, Zhou Y, Ma Q, Yu Q, Zhao C, Sun K (2018) The Bet-Hedging Strategies for Seedling Emergence of Calligonum mongolicum to Adapt to the Extreme Desert Environments in Northwestern China. Front. Plant Sci. 9: 1167.
Gaut BS, Seymour D, Liu QP, Zhou YF# (2018) Demography and its effects on genomic variation in crop domestication. Nature Plants 4: 512–520.
Tian XM, Wang QY, Zhou YF# (2018) Euphorbia section Hainanensis (Euphorbiaceae), a new section endemic to the Hainan Island of China from biogeographical, karyological, and phenotypical evidence. Front. Plant Sci. 9: 660.
Zhou YF, Massonnet M, Sanjak J, Cantu D, Gaut BS (2017) Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication. PNAS 114: 11715-11720.
Liu QP, Zhou YF, Morrell P, Gaut B (2017) Deleterious variants in Asian rice and the potential cost of domestication. Molecular Biology and Evolution 34: 908-924.
Zhou YF, Duvaux L, Ren G, Zhang LR, Savolainen O, Liu J (2017) Importance of incomplete lineage sorting and introgression in the origin of shared genetic variation between two closely related pines with overlapping distributions. Heredity 118: 211-220.
Zhou YF, Zhang LR, Liu JQ, Wu GL, Savolainen O (2014) Climatic adaptation and ecological divergence between two closely related pines species in Southeast China. Molecular Ecology 23: 3504–3522.
Zhou YF (2014) Demographic history and climatic adaptation in ecological divergence between two closely related parapatric pine species. Acta Universitatis Ouluensis. A, Scientiae rerum naturalium, ISSN: 0355-3191. Thesis.
Ren GP, Abbott RJ, Zhou YF, Zhang LR, Peng YL, Liu JQ (2012) Genetic divergence, range expansion and possible homoploid hybrid speciation among pine species in northeast China. Heredity 108: 552-562.
Jiang ZY, Peng YL, Hu XX, Zhou YF, Liu JQ (2011) Cytoplasmic DNA variation in and genetic delimitation of Abies nephrolepis and Abies holophylla in northeastern China. Canadian Journal of Forest Research, 41:1555-1561.
Zhang LR, Peng YL, Ren GP, Zhou YF, Li ZH, Liu JQ (2011) Population genetic diversity and species divergence of Pinus massoniana and P. hwangshanensis at two nucleotide loci. Chinese Journal of Plant Ecology 35: 531-538 (In Chinese with English abstract).
Li Y, Stocks M, Hemmilä S, Källman T, Zhu HT, Zhou YF, Chen J, Liu JQ, Lascoux M (2010) Demographic histories of four spruce (Picea) species of the Qinghai-Tibetan Plateau and neighboring areas inferred from multiple nuclear loci. Molecular Biology and Evolution 27: 1001-1014.
Zhou YF, Abbott RJ, Jiang ZY, Du, FK, Milne RI, Liu JQ (2010) Gene flow and species delimitation: a case study of two pine species with overlapping distributions in southeast China. Evolution 64: 2342-2352.